Band size from a gel, against a marked ladder
Calibrate a gel lane against a marked DNA ladder and read the size of any other band from how far it ran. Migration distance is approximately linear in log(size) over a gel's resolving range, so a least-squares line through the marked rungs interpolates between them — and NOT outside them, which is why a band beyond the marked span comes back flagged extrapolated rather than quietly clamped to the nearest rung. Reports R² and the per-rung residual, because one mis-marked rung (a doublet marked as one band, a mis-clicked centre) shifts every size on the gel and a single R² hides it. Distances may be in pixels, millimetres or anything else, as long as they are all measured the same way from the same reference line.
Request
- Base URL: https://seqbench.com/api/v1
- URL: https://seqbench.com/api/v1/gel_band_size
- Auth: none required
Request body
Response
Tool ran successfully.
Example response
{
"provenance": {
"apiVersion": "1.1.0"
}
}Changes
No recorded changes to this operation across all 1 revision of this API.