CAcatmaid
skeletons

Retrieve a list of down/up-stream partners of a set of skeletons.

Changed on

Retrieve a list of down/up-stream partners of a set of skeletons.

From a queried set of source skeletons, find all upstream and downstream partners, the number of synapses between each source and each partner, and a list of reviewers for each partner set. Confidence distributions for each synapse count are included. Optionally find only those partners that are common between the source skeleton set.

The returned confidence distribution is a histogram with 5 entries, each one representing a confidence value in the range [1,5], with 5 being the most confident. A confidence distribution like [0,0,0,3,9] states that there are 3 links with confidence 4 and 9 links with confidence 5.

posthttp://localhost:8000/{project_id}/skeletons/connectivity

Request

Path parameters

project_idstring required

Request body application/x-www-form-urlencoded

source_skeleton_idsstring required

IDs of the skeletons whose partners to find

boolean_opstring required

Whether to find partners of any source skeleton ("OR") or partners common to all source skeletons ("AND")

with_nodesstring

Whether to return detailed connectivity information that includes partner sites.

link_typesstring

A list of allowed link types: incoming, outgoing, abutting, gapjunction, tightjunction, desmosome, attachment, close_object, mitochondrion

Response

Created

Changes