CAcatmaid
skeletons

Get a synaptic graph between skeletons compartmentalized by confidence.

Changed on

Get a synaptic graph between skeletons compartmentalized by confidence.

Given a set of skeletons, retrieve presynaptic-to-postsynaptic edges between them, annotated with count. If a confidence threshold is supplied, compartmentalize the skeletons at edges in the arbor below that threshold and report connectivity based on these compartments.

When skeletons are split into compartments, nodes in the graph take an string ID like {skeleton_id}_{compartment #}.

posthttp://localhost:8000/{project_id}/skeletons/confidence-compartment-subgraph

Request

Path parameters

project_idstring required

Request body application/x-www-form-urlencoded

skeleton_ids[]string required

IDs of the skeletons to graph

confidence_thresholdstring

Confidence value below which to segregate compartments

bandwidthstring

Bandwidth in nanometers

cable_spreadstring

Cable spread in nanometers

expand[]string

IDs of the skeletons to expand

link_types[]string

IDs of link types to respect

allowed_connector_ids[]string

(Optional) IDs of allowed conectors. All other connectors will be ignored.

Response

Created

Changes