Alignment & variants

Variant Comparator

Align a query to a reference and call variants (substitutions, insertions, deletions) in HGVS g. notation, with optional coding effects.

post/variant_comparator

Request

  • Base URL: https://seqbench.com/api/v1
  • URL: https://seqbench.com/api/v1/variant_comparator
  • Auth: none required

Request body

referencestring required

Reference / wild-type sequence (raw or FASTA).

querystring required

Query / variant sequence (raw or FASTA).

codingboolean

Treat as a coding sequence and report amino-acid effects.

frameStartinteger

1-based reading-frame start (used when coding is true).

Response

Tool ran successfully.

okunknown required
toolstring required

The tool slug that ran.

resultobject required

Tool-specific output object. Its shape depends on the tool — call GET /{tool} or see the docs for each tool's fields.

Example response

{
  "provenance": {
    "apiVersion": "1.1.0"
  }
}

Changes

No recorded changes to this operation across all 1 revision of this API.