Sequence

Motif Finder

Find (overlapping) occurrences of an IUPAC motif on either strand, allowing mismatches.

Batchable via POST /batch.

post/motif_finder

Request

  • Base URL: https://seqbench.com/api/v1
  • URL: https://seqbench.com/api/v1/motif_finder
  • Auth: none required

Request body

sequencestring required

Nucleotide sequence (raw or FASTA; IUPAC accepted).

motifstring required

Query motif; IUPAC ambiguity codes (R Y S W K M B D H V N) allowed.

searchReverseStrandboolean

Also search the reverse strand.

maxMismatchesinteger

Maximum allowed mismatches per match.

limitinteger

How many matches to return. count always reports every hit found and truncated says whether the list was cut.

Response

Tool ran successfully.

okunknown required
toolstring required

The tool slug that ran.

resultobject required

Tool-specific output object. Its shape depends on the tool — call GET /{tool} or see the docs for each tool's fields.

Example response

{
  "provenance": {
    "apiVersion": "1.1.0"
  }
}

Changes

No recorded changes to this operation across all 1 revision of this API.