REreactome
identifiers

Analyse the identifiers in the file over the different species

Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)

post/identifiers/form

Request

Query parameters

interactorsboolean

Include interactors

speciesstring

list of species to filter the result (accepts taxonomy ids, species names and dbId)

pageSizeinteger

pathways per page

pageinteger

page number

sortBy'NAME' | 'TOTAL_ENTITIES' | 'TOTAL_INTERACTORS' | 'TOTAL_REACTIONS' | 'FOUND_ENTITIES' | 'FOUND_INTERACTORS' | 'FOUND_REACTIONS' | 'ENTITIES_RATIO' | 'ENTITIES_PVALUE' | 'ENTITIES_FDR' | 'REACTIONS_RATIO'

how to sort the result

Example:ENTITIES_PVALUE
order'ASC' | 'DESC'

specifies the order

Example:ASC
resource'TOTAL' | 'UNIPROT' | 'ENSEMBL' | 'CHEBI' | 'IUPHAR' | 'MIRBASE' | 'NCBI_PROTEIN' | 'EMBL' | 'COMPOUND' | 'PUBCHEM_COMPOUND'

the resource to sort

Example:TOTAL
pValuenumber double

defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned

includeDiseaseboolean

set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)

mininteger

minimum number of contained entities per pathway (takes into account the resource)

maxinteger

maximum number of contained entities per pathway (takes into account the resource)

importableOnlyboolean

Filters resources to only includes importable ones

Request body multipart/form-data

filestring binary required

A file with the data to be analysed

Changes

No recorded changes to this operation across all 1 revision of this API.