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workflows

Searches Zenodo for DOIs referencing GitHub repos, and updates Dockstore entries with them

post/workflows/updateDois

Query parameters

filterstring

Optional GitHub full repository name, e.g., myorg/myrepo, to only update entries for that repository

daysSinceLastReleaseinteger

Only check GitHub repos with releases over this number of days. Don't set to check all repos

Response

default response

aliasesobject
approvedAITopicboolean

Indicates if the topicAI has been approved by the user

archivedboolean
autoGenerateDoisboolean

Whether to automatically generate DOIs for GitHub tags

checker_idinteger
conceptDoistring

The Digital Object Identifier (DOI) representing all of the versions of your workflow

conceptDoisobject

The Digital Object Identifier (DOI) representing all of the versions of your workflow

dbCreateDateinteger
dbUpdateDateinteger
defaultTestParameterFilePathstring
defaultVersionstring
deletableboolean
descriptionstring
descriptorType'SMK' | 'CWL' | 'WDL' | 'gxformat2' | 'SWL' | 'NFL' | 'service' | 'jupyter'
descriptorTypeSubclass'docker-compose' | 'helm' | 'swarm' | 'kubernetes' | 'Python' | 'R' | 'Javascript' | 'Scala' | 'Julia' | 'other' | 'n/a'
doiSelection'USER' | 'DOCKSTORE' | 'GITHUB'

The Digital Object Identifier (DOI) to display publicly

entryType'TOOL' | 'WORKFLOW' | 'SERVICE' | 'APPTOOL' | 'NOTEBOOK'

Entry type

forumUrlstring
full_workflow_pathstring
gitUrlstring
has_checkerboolean
idinteger
isCheckerboolean
is_publishedboolean
lastUpdatedinteger
last_modifiedinteger
last_modified_dateinteger
latestReleaseDateinteger

The timestamp of the most recent version control release, such as a GitHub release

metricsByPlatformobject
mode'FULL' | 'STUB' | 'HOSTED' | 'DOCKSTORE_YML'
organizationstring
pathstring
repositorystring
sourceControl'dockstore.org' | 'github.com' | 'bitbucket.org' | 'gitlab.com'
source_control_providerstring
topicstring
topicAIstring

Short description of the entry generated by AI

topicAutomaticstring

Short description of the entry gotten automatically

topicIdinteger
topicManualstring

Short description of the entry manually updated

topicSelection'AUTOMATIC' | 'MANUAL' | 'AI'

Which topic to display to the public users

trsIdstring
typestring required
userIdToOrcidPutCodeobject

The presence of the put code for a userid indicates the entry was exported to ORCID for the corresponding Dockstore user.

workflowNamestring
workflow_pathstring

Example response

[
  {
    "metadataFromVersion": {
      "name": "latest",
      "reference": "master"
    },
    "workflowVersions": [
      {
        "name": "latest",
        "reference": "master"
      }
    ]
  }
]

Changes