import {z} from 'zod'

export type AlterationFilter = {copyNumberAlterationEventTypes?: {[key: string]: boolean} | undefined, includeDriver?: boolean | undefined, includeGermline?: boolean | undefined, includeSomatic?: boolean | undefined, includeUnknownOncogenicity?: boolean | undefined, includeUnknownStatus?: boolean | undefined, includeUnknownTier?: boolean | undefined, includeVUS?: boolean | undefined, mutationEventTypes?: {[key: string]: boolean} | undefined, structuralVariants?: boolean | undefined, tiersBooleanMap?: {[key: string]: boolean} | undefined};

export type DataFilterValue = {end?: number | undefined, start?: number | undefined, value?: string | undefined};

export type ClinicalDataFilter = {attributeId?: string | undefined, values?: Array<DataFilterValue> | undefined};

export type DataFilter = {values?: Array<DataFilterValue> | undefined};

export type GeneFilterQuery = {alterations?: (Array<'AMP' | 'DIPLOID' | 'GAIN' | 'HETLOSS' | 'HOMDEL'>) | undefined, entrezGeneId?: number | undefined, hugoGeneSymbol?: string | undefined, includeDriver?: boolean | undefined, includeGermline?: boolean | undefined, includeSomatic?: boolean | undefined, includeUnknownOncogenicity?: boolean | undefined, includeUnknownStatus?: boolean | undefined, includeUnknownTier?: boolean | undefined, includeVUS?: boolean | undefined, tiersBooleanMap?: {[key: string]: boolean} | undefined};

export type GeneFilter = {geneQueries?: Array<Array<GeneFilterQuery>> | undefined, molecularProfileIds?: Array<string> | undefined};

export type GenericAssayDataFilter = {profileType?: string | undefined, stableId?: string | undefined, values?: Array<DataFilterValue> | undefined};

export type GenomicDataFilter = {hugoGeneSymbol?: string | undefined, profileType?: string | undefined, values?: Array<DataFilterValue> | undefined};

export type PatientTreatmentFilter = {treatment?: string | undefined};

export type OredPatientTreatmentFilters = {filters?: Array<PatientTreatmentFilter> | undefined};

export type AndedPatientTreatmentFilters = {filters?: Array<OredPatientTreatmentFilters> | undefined};

export type SampleIdentifier = {sampleId?: string | undefined, studyId?: string | undefined};

export type SampleTreatmentFilter = {time?: ('Post' | 'Pre') | undefined, treatment?: string | undefined};

export type OredSampleTreatmentFilters = {filters?: Array<SampleTreatmentFilter> | undefined};

export type AndedSampleTreatmentFilters = {filters?: Array<OredSampleTreatmentFilters> | undefined};

export type StructuralVariantGeneSubQuery = {entrezId?: number | undefined, hugoSymbol?: string | undefined, specialValue?: ('ANY_GENE' | 'NO_GENE') | undefined};

export type StructuralVariantFilterQuery = {gene1Query?: StructuralVariantGeneSubQuery | undefined, gene2Query?: StructuralVariantGeneSubQuery | undefined, includeDriver?: boolean | undefined, includeGermline?: boolean | undefined, includeSomatic?: boolean | undefined, includeUnknownOncogenicity?: boolean | undefined, includeUnknownStatus?: boolean | undefined, includeUnknownTier?: boolean | undefined, includeVUS?: boolean | undefined, tiersBooleanMap?: {[key: string]: boolean} | undefined};

export type StudyViewStructuralVariantFilter = {molecularProfileIds?: Array<string> | undefined, structVarQueries?: Array<Array<StructuralVariantFilterQuery>> | undefined};

export type StudyViewFilter = {alterationFilter?: AlterationFilter | undefined, caseLists?: Array<Array<string>> | undefined, clinicalDataFilters?: Array<ClinicalDataFilter> | undefined, clinicalEventFilters?: Array<DataFilter> | undefined, customDataFilters?: Array<ClinicalDataFilter> | undefined, geneFilters?: Array<GeneFilter> | undefined, genericAssayDataFilters?: Array<GenericAssayDataFilter> | undefined, genomicDataFilters?: Array<GenomicDataFilter> | undefined, genomicProfiles?: Array<Array<string>> | undefined, patientTreatmentFilters?: AndedPatientTreatmentFilters | undefined, patientTreatmentGroupFilters?: AndedPatientTreatmentFilters | undefined, patientTreatmentTargetFilters?: AndedPatientTreatmentFilters | undefined, sampleIdentifiers?: Array<SampleIdentifier> | undefined, sampleTreatmentFilters?: AndedSampleTreatmentFilters | undefined, sampleTreatmentGroupFilters?: AndedSampleTreatmentFilters | undefined, sampleTreatmentTargetFilters?: AndedSampleTreatmentFilters | undefined, structuralVariantFilters?: Array<StudyViewStructuralVariantFilter> | undefined, studyIds?: Array<string> | undefined};

export type CreateApiTreatmentsSampleArgs = {tier?: ('Agent' | 'AgentClass' | 'AgentTarget') | undefined, body: StudyViewFilter};

export type CreateApiTreatmentsSampleOptions = {baseUrl: string, fetch?: typeof fetch | undefined};

export const clinicalEventSample = z.object({patientId: z.string().optional(), sampleId: z.string().optional(), studyId: z.string().optional(), timeTaken: z.number().int().optional()});

export const sampleTreatmentRow = z.object({count: z.number().int().optional(), samples: z.array(clinicalEventSample).optional(), time: z.enum(["Post", "Pre"]).optional(), treatment: z.string().optional()});

export const createApiTreatmentsSampleResponse = z.array(sampleTreatmentRow);

export const validateResponse = async <Output>(
  schema: {
    readonly '~standard': {
      readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }>
    }
  },
  value: unknown
): Promise<Output> => {
  const result = await schema['~standard'].validate(value)

  if (result.issues !== undefined) {
    const detail = result.issues
      .map(({ message, path }) =>
        path?.length
          ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}`
          : message
      )
      .join('; ')

    throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } })
  }

  return result.value
};

/**
 * Get all sample level treatments
 * 
 * POST /treatments/sample
 */
export const createApiTreatmentsSample = async (args: CreateApiTreatmentsSampleArgs, options: CreateApiTreatmentsSampleOptions) => {
const {baseUrl, fetch: fetchFn = fetch} = options ?? {}

const query = new URLSearchParams()
const headers = new Headers()
headers.set('content-type', "application/json")
headers.set('accept', "application/json")

if (args.tier != null) query.append("tier", String(args.tier))

const url = `${baseUrl.replace(/\/+$/, '')}/treatments/sample${query.size > 0 ? `?${query}` : ''}`

const res = await fetchFn(url, {method: "POST", headers, body: JSON.stringify(args.body)})

if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}})

return validateResponse(createApiTreatmentsSampleResponse, await res.json())
};