import {z} from 'zod' export type SampleIdentifier = {sampleId?: string | undefined, studyId?: string | undefined}; export type CreateApiCopyNumberSegmentsFetchArgs = {chromosome?: string | undefined, projection?: ('DETAILED' | 'ID' | 'META' | 'SUMMARY') | undefined, body: Array}; export type CreateApiCopyNumberSegmentsFetchOptions = {baseUrl: string, fetch?: typeof fetch | undefined}; export const copyNumberSeg = z.object({chromosome: z.string(), end: z.number().int(), numberOfProbes: z.number().int(), patientId: z.string(), sampleId: z.string(), segmentMean: z.number(), start: z.number().int(), studyId: z.string(), uniquePatientKey: z.string().optional(), uniqueSampleKey: z.string().optional()}); export const createApiCopyNumberSegmentsFetchResponse = z.array(copyNumberSeg); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Fetch copy number segments by sample ID * * POST /copy-number-segments/fetch */ export const createApiCopyNumberSegmentsFetch = async (args: CreateApiCopyNumberSegmentsFetchArgs, options: CreateApiCopyNumberSegmentsFetchOptions) => { const {baseUrl, fetch: fetchFn = fetch} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('content-type', "application/json") headers.set('accept', "application/json") if (args.chromosome != null) query.append("chromosome", String(args.chromosome)) if (args.projection != null) query.append("projection", String(args.projection)) const url = `${baseUrl.replace(/\/+$/, '')}/copy-number-segments/fetch${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "POST", headers, body: JSON.stringify(args.body)}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(createApiCopyNumberSegmentsFetchResponse, await res.json()) };