import {z} from 'zod' export type GetApiScop3pApiV1RinComputePdbIdArgs = {pdb_id: string, chain?: string | undefined, cutoff?: number | undefined}; export type GetApiScop3pApiV1RinComputePdbIdOptions = {baseUrl: string, fetch?: typeof fetch | undefined}; export const rINNodeResponse = z.object({id: z.string()}); export const rINEdgeResponse = z.object({source: z.string(), target: z.string(), distance: z.string(), edge_weight: z.string()}); export const rINResponse = z.object({nodes: z.array(rINNodeResponse), edges: z.array(rINEdgeResponse)}); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Compute RIN on-the-fly from a PDB file * * GET /scop3p/api/v1/rin/compute/{pdb_id} */ export const getApiScop3pApiV1RinComputePdbId = async (args: GetApiScop3pApiV1RinComputePdbIdArgs, options: GetApiScop3pApiV1RinComputePdbIdOptions) => { const {baseUrl, fetch: fetchFn = fetch} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('accept', "application/json") if (args.chain != null) query.append("chain", String(args.chain)) if (args.cutoff != null) query.append("cutoff", String(args.cutoff)) const url = `${baseUrl.replace(/\/+$/, '')}/scop3p/api/v1/rin/compute/${encodeURIComponent(String(args.pdb_id))}${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "GET", headers}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(rINResponse, await res.json()) };