import {z} from 'zod' export type GetApiScop3pApiV1ProteinsBrowseArgs = {page?: number | undefined, page_size?: number | undefined, project_id?: (string | null) | undefined, gene?: (string | null) | undefined, keyword?: (string | null) | undefined}; export type GetApiScop3pApiV1ProteinsBrowseOptions = {baseUrl: string, fetch?: typeof fetch | undefined}; export const proteinBrowse = z.object({accession: z.string().nullable(), uniprot_id: z.string().nullable(), protein_name: z.string().nullable(), length: z.number().int().nullable().optional(), genes: z.string().nullable().optional(), modification_count: z.number().int().optional(), project_count: z.number().int().optional()}); export const proteinBrowseResponse = z.object({items: z.array(proteinBrowse), total: z.number().int()}); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Browse proteins with filtering and pagination * * GET /scop3p/api/v1/proteins/browse */ export const getApiScop3pApiV1ProteinsBrowse = async (args: GetApiScop3pApiV1ProteinsBrowseArgs, options: GetApiScop3pApiV1ProteinsBrowseOptions) => { const {baseUrl, fetch: fetchFn = fetch} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('accept', "application/json") if (args.page != null) query.append("page", String(args.page)) if (args.page_size != null) query.append("page_size", String(args.page_size)) if (args.project_id != null) query.append("project_id", String(args.project_id)) if (args.gene != null) query.append("gene", String(args.gene)) if (args.keyword != null) query.append("keyword", String(args.keyword)) const url = `${baseUrl.replace(/\/+$/, '')}/scop3p/api/v1/proteins/browse${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "GET", headers}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(proteinBrowseResponse, await res.json()) };