import {z} from 'zod'

export type GetApiScop3pApiV1ProteinsAccessionStructuresModificationsArgs = {accession: string};

export type GetApiScop3pApiV1ProteinsAccessionStructuresModificationsOptions = {baseUrl: string, fetch?: typeof fetch | undefined};

export const structureResponse = z.object({pdb_id: z.string().nullable(), resolution: z.number().nullable(), preferred_assembly_name: z.string().nullable(), preferred_assembly_form: z.string().nullable(), method: z.string().nullable(), pdb_observed_ptm_residues: z.string().nullable()});

export const structureModificationResponse = z.object({uniprot_position: z.number().int().nullable(), residue: z.string().nullable(), secondary_structure: z.string().nullable(), chain_id: z.string().nullable(), pdb_position: z.number().int().nullable(), accessible_surface_area: z.number().nullable(), relative_solvant_accessibility: z.number().nullable(), ms_mapped_pdb_position: z.number().int().nullable(), l_protein_id: z.number().int().nullable().optional(), l_structure_id: z.number().int().nullable().optional()});

export const structureWithModificationsResponse = z.object({structure: structureResponse, modifications: z.array(structureModificationResponse)});

export const getApiScop3pApiV1ProteinsAccessionStructuresModificationsResponse = z.array(structureWithModificationsResponse);

export const validateResponse = async <Output>(
  schema: {
    readonly '~standard': {
      readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }>
    }
  },
  value: unknown
): Promise<Output> => {
  const result = await schema['~standard'].validate(value)

  if (result.issues !== undefined) {
    const detail = result.issues
      .map(({ message, path }) =>
        path?.length
          ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}`
          : message
      )
      .join('; ')

    throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } })
  }

  return result.value
};

/**
 * List structure modifications by accession
 * 
 * GET /scop3p/api/v1/proteins/{accession}/structures-modifications
 */
export const getApiScop3pApiV1ProteinsAccessionStructuresModifications = async (args: GetApiScop3pApiV1ProteinsAccessionStructuresModificationsArgs, options: GetApiScop3pApiV1ProteinsAccessionStructuresModificationsOptions) => {
const {baseUrl, fetch: fetchFn = fetch} = options ?? {}

const query = new URLSearchParams()
const headers = new Headers()
headers.set('accept', "application/json")

const url = `${baseUrl.replace(/\/+$/, '')}/scop3p/api/v1/proteins/${encodeURIComponent(String(args.accession))}/structures-modifications${query.size > 0 ? `?${query}` : ''}`

const res = await fetchFn(url, {method: "GET", headers})

if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}})

return validateResponse(getApiScop3pApiV1ProteinsAccessionStructuresModificationsResponse, await res.json())
};