---
title: "SwissOpenEM (@swissopenem)"
description: "Open electron microscopy data platform (ETH Zurich / PSI)."
account: "swissopenem"
---

# SwissOpenEM

Open electron microscopy data platform (ETH Zurich / PSI).

## APIs

6 public APIs with a stored document.
Each links to its markdown overview; the same address with
`/llms.txt` in place of `.md` lists its operations.
Changes across these APIs: https://skmtc.dev/swissopenem/feed.md

- [SciCat Ingestor API](https://skmtc.dev/swissopenem/apis/scicat-ingestor-api.md): Scientific data: browse folders, transfer and ingest datasets, extract metadata, check transfer status
- [OpenEm Depositor API](https://skmtc.dev/swissopenem/apis/openem-depositor-api.md): Structural biology: create OneDep and EMPIAR depositions, upload files, and generate metadata
- [SciCat Globus Proxy API (openapi)](https://skmtc.dev/swissopenem/apis/scicat-globus-proxy-api-2.md): Data transfers: request, cancel and delete Globus transfer tasks, plus version and health checks
- [SciCat Globus Proxy API (openapi)](https://skmtc.dev/swissopenem/apis/scicat-globus-proxy-api.md): Data transfers: request, cancel or delete transfer tasks, check service version and health
- [ETHZ Archiver Service (openapi)](https://skmtc.dev/swissopenem/apis/ethz-archiver-service-2.md): Archiving: request presigned S3 uploads, finalize datasets and schedule archiver jobs
- [ETHZ Archiver Service (openapi)](https://skmtc.dev/swissopenem/apis/ethz-archiver-service.md): Archiving: request presigned S3 uploads, finalize datasets and schedule archiver jobs