import {z} from 'zod' export type GetApiRestV1HoldingsRemovedEntryIdArgs = {entry_id: string}; export type GetApiRestV1HoldingsRemovedEntryIdOptions = {baseUrl: string, fetch?: typeof fetch | undefined}; export const rcsbRepositoryHoldingsInsilicoModels = z.object({audit_authors: z.array(z.string()).optional(), deposit_date: z.string().optional(), id_codes_replaced_by: z.array(z.string()).optional(), release_date: z.string().optional(), remove_date: z.string().optional(), status_code: z.enum(["OBS", "TRSF", "WDRN"]).optional(), title: z.string().optional()}); export const rcsbRepositoryHoldingsRemoved = z.object({audit_authors: z.array(z.string()).optional(), deposit_date: z.string().optional(), details: z.string().optional(), id_codes_replaced_by: z.array(z.string()).optional(), release_date: z.string().optional(), remove_date: z.string().optional(), repository_content_types: z.array(z.enum(["Combined NMR data (NEF)", "Combined NMR data (NMR-STAR)", "NMR chemical shifts", "NMR restraints V1", "NMR restraints V2", "assembly PDB", "assembly mmCIF", "entry PDB", "entry PDB bundle", "entry PDBML", "entry mmCIF", "structure factors"])).optional(), title: z.string().optional()}); export const rcsbRepositoryHoldingsRemovedAuditAuthor = z.object({audit_author: z.string().optional(), ordinal_id: z.number().int()}); export const rcsbRepositoryHoldingsRemovedEntryContainerIdentifiers = z.object({entry_id: z.string(), rcsb_id: z.string().optional(), update_id: z.string().optional()}); export const rcsbRepositoryHoldingsSuperseded = z.object({id_codes_superseded: z.array(z.string()).optional()}); export const rcsbRepositoryHoldingsTransferred = z.object({audit_authors: z.array(z.string()).optional(), deposit_date: z.string().optional(), release_date: z.string().optional(), remote_accession_code: z.string().optional(), remote_repository_name: z.string().optional(), repository_content_types: z.array(z.enum(["Combined NMR data (NEF)", "Combined NMR data (NMR-STAR)", "NMR chemical shifts", "NMR restraints", "coordinates", "structure factors"])).optional(), status_code: z.literal("TRSF").optional(), title: z.string().optional()}); export const removedEntry = z.object({rcsb_repository_holdings_insilico_models: rcsbRepositoryHoldingsInsilicoModels.optional(), rcsb_repository_holdings_removed: rcsbRepositoryHoldingsRemoved.optional(), rcsb_repository_holdings_removed_audit_author: z.array(rcsbRepositoryHoldingsRemovedAuditAuthor).optional(), rcsb_repository_holdings_removed_entry_container_identifiers: rcsbRepositoryHoldingsRemovedEntryContainerIdentifiers.optional(), rcsb_repository_holdings_superseded: rcsbRepositoryHoldingsSuperseded.optional(), rcsb_repository_holdings_transferred: rcsbRepositoryHoldingsTransferred.optional(), rcsb_id: z.string()}); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Get the description of the structure that was removed from the PDB repository. * * GET /rest/v1/holdings/removed/{entry_id} */ export const getApiRestV1HoldingsRemovedEntryId = async (args: GetApiRestV1HoldingsRemovedEntryIdArgs, options: GetApiRestV1HoldingsRemovedEntryIdOptions) => { const {baseUrl, fetch: fetchFn = fetch} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('accept', "application/json;charset=utf-8") const url = `${baseUrl.replace(/\/+$/, '')}/rest/v1/holdings/removed/${encodeURIComponent(String(args.entry_id))}${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "GET", headers}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(removedEntry, await res.json()) };