import {z} from 'zod'

export type GetApiSessionsSessionIdVariantsBrowseArgs = {session_id: string, scope?: ('variants' | 'phenotype' | 'screening' | 'denovo' | 'mtdna' | 'carriers' | 'dominant' | 'review') | undefined, gene?: string | undefined, classification?: string | undefined, tier?: string | undefined, hpo?: string | undefined, cursor?: (string | null) | undefined, limit?: number | undefined, version?: (string | null) | undefined, min_depth?: (number | null) | undefined, min_quality?: (number | null) | undefined, min_vaf?: (number | null) | undefined, max_vaf?: (number | null) | undefined, max_gnomad_af?: (number | null) | undefined, include_unknown_af?: boolean | undefined, impact?: (Array<'HIGH' | 'MODERATE' | 'LOW' | 'MODIFIER'> | null) | undefined, representation?: ('cards' | 'table') | undefined, scv_significance?: (Array<'pathogenic' | 'likely_pathogenic' | 'uncertain_significance' | 'likely_benign' | 'benign'> | null) | undefined, scv_minimum?: (number | null) | undefined, scv_include_unannotated?: boolean | undefined, chromosome?: (Array<string> | null) | undefined, variant_type?: (Array<string> | null) | undefined, genotype?: (Array<string> | null) | undefined, inheritance_mode?: (Array<string> | null) | undefined, consequence?: (Array<string> | null) | undefined, biotype?: (Array<string> | null) | undefined, acmg_criterion?: (Array<string> | null) | undefined, clinvar_significance?: (Array<string> | null) | undefined, start_position?: (number | null) | undefined, end_position?: (number | null) | undefined, has_hpo?: (boolean | null) | undefined, min_review_stars?: (number | null) | undefined, quality_status?: (Array<string> | null) | undefined, source_filter?: (Array<string> | null) | undefined, min_genotype_quality?: (number | null) | undefined, min_confidence?: (number | null) | undefined, min_priority_score?: (number | null) | undefined, min_sift_score?: (number | null) | undefined, max_sift_score?: (number | null) | undefined, min_alphamissense_score?: (number | null) | undefined, max_alphamissense_score?: (number | null) | undefined, min_metasvm_score?: (number | null) | undefined, max_metasvm_score?: (number | null) | undefined, min_dann_score?: (number | null) | undefined, max_dann_score?: (number | null) | undefined, min_phylop100way_vertebrate?: (number | null) | undefined, max_phylop100way_vertebrate?: (number | null) | undefined, min_gerp_rs?: (number | null) | undefined, max_gerp_rs?: (number | null) | undefined, min_bayesdel_addaf_score?: (number | null) | undefined, max_bayesdel_addaf_score?: (number | null) | undefined, min_bayesdel_noaf_score?: (number | null) | undefined, max_bayesdel_noaf_score?: (number | null) | undefined, min_mpc_score?: (number | null) | undefined, max_mpc_score?: (number | null) | undefined, min_spliceai_max_score?: (number | null) | undefined, max_spliceai_max_score?: (number | null) | undefined, min_pli?: (number | null) | undefined, max_pli?: (number | null) | undefined, min_oe_lof_upper?: (number | null) | undefined, max_oe_lof_upper?: (number | null) | undefined, min_oe_lof?: (number | null) | undefined, max_oe_lof?: (number | null) | undefined, min_mis_z?: (number | null) | undefined, max_mis_z?: (number | null) | undefined};

export type GetApiSessionsSessionIdVariantsBrowseOptions = {baseUrl: string, fetch?: typeof fetch | undefined};

export const getApiSessionsSessionIdVariantsBrowseResponse = z.unknown();

export const validateResponse = async <Output>(
  schema: {
    readonly '~standard': {
      readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray<PropertyKey | { readonly key: PropertyKey }> | undefined }> }>
    }
  },
  value: unknown
): Promise<Output> => {
  const result = await schema['~standard'].validate(value)

  if (result.issues !== undefined) {
    const detail = result.issues
      .map(({ message, path }) =>
        path?.length
          ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}`
          : message
      )
      .join('; ')

    throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } })
  }

  return result.value
};

/**
 * Result Page
 * 
 * GET /sessions/{session_id}/variants/browse
 */
export const getApiSessionsSessionIdVariantsBrowse = async (args: GetApiSessionsSessionIdVariantsBrowseArgs, options: GetApiSessionsSessionIdVariantsBrowseOptions) => {
const {baseUrl, fetch: fetchFn = fetch} = options ?? {}

const query = new URLSearchParams()
const headers = new Headers()
headers.set('accept', "application/json")

if (args.scope != null) query.append("scope", String(args.scope))
if (args.gene != null) query.append("gene", String(args.gene))
if (args.classification != null) query.append("classification", String(args.classification))
if (args.tier != null) query.append("tier", String(args.tier))
if (args.hpo != null) query.append("hpo", String(args.hpo))
if (args.cursor != null) query.append("cursor", String(args.cursor))
if (args.limit != null) query.append("limit", String(args.limit))
if (args.version != null) query.append("version", String(args.version))
if (args.min_depth != null) query.append("min_depth", String(args.min_depth))
if (args.min_quality != null) query.append("min_quality", String(args.min_quality))
if (args.min_vaf != null) query.append("min_vaf", String(args.min_vaf))
if (args.max_vaf != null) query.append("max_vaf", String(args.max_vaf))
if (args.max_gnomad_af != null) query.append("max_gnomad_af", String(args.max_gnomad_af))
if (args.include_unknown_af != null) query.append("include_unknown_af", String(args.include_unknown_af))
for (const item of args.impact ?? []) query.append("impact", String(item))
if (args.representation != null) query.append("representation", String(args.representation))
for (const item of args.scv_significance ?? []) query.append("scv_significance", String(item))
if (args.scv_minimum != null) query.append("scv_minimum", String(args.scv_minimum))
if (args.scv_include_unannotated != null) query.append("scv_include_unannotated", String(args.scv_include_unannotated))
for (const item of args.chromosome ?? []) query.append("chromosome", String(item))
for (const item of args.variant_type ?? []) query.append("variant_type", String(item))
for (const item of args.genotype ?? []) query.append("genotype", String(item))
for (const item of args.inheritance_mode ?? []) query.append("inheritance_mode", String(item))
for (const item of args.consequence ?? []) query.append("consequence", String(item))
for (const item of args.biotype ?? []) query.append("biotype", String(item))
for (const item of args.acmg_criterion ?? []) query.append("acmg_criterion", String(item))
for (const item of args.clinvar_significance ?? []) query.append("clinvar_significance", String(item))
if (args.start_position != null) query.append("start_position", String(args.start_position))
if (args.end_position != null) query.append("end_position", String(args.end_position))
if (args.has_hpo != null) query.append("has_hpo", String(args.has_hpo))
if (args.min_review_stars != null) query.append("min_review_stars", String(args.min_review_stars))
for (const item of args.quality_status ?? []) query.append("quality_status", String(item))
for (const item of args.source_filter ?? []) query.append("source_filter", String(item))
if (args.min_genotype_quality != null) query.append("min_genotype_quality", String(args.min_genotype_quality))
if (args.min_confidence != null) query.append("min_confidence", String(args.min_confidence))
if (args.min_priority_score != null) query.append("min_priority_score", String(args.min_priority_score))
if (args.min_sift_score != null) query.append("min_sift_score", String(args.min_sift_score))
if (args.max_sift_score != null) query.append("max_sift_score", String(args.max_sift_score))
if (args.min_alphamissense_score != null) query.append("min_alphamissense_score", String(args.min_alphamissense_score))
if (args.max_alphamissense_score != null) query.append("max_alphamissense_score", String(args.max_alphamissense_score))
if (args.min_metasvm_score != null) query.append("min_metasvm_score", String(args.min_metasvm_score))
if (args.max_metasvm_score != null) query.append("max_metasvm_score", String(args.max_metasvm_score))
if (args.min_dann_score != null) query.append("min_dann_score", String(args.min_dann_score))
if (args.max_dann_score != null) query.append("max_dann_score", String(args.max_dann_score))
if (args.min_phylop100way_vertebrate != null) query.append("min_phylop100way_vertebrate", String(args.min_phylop100way_vertebrate))
if (args.max_phylop100way_vertebrate != null) query.append("max_phylop100way_vertebrate", String(args.max_phylop100way_vertebrate))
if (args.min_gerp_rs != null) query.append("min_gerp_rs", String(args.min_gerp_rs))
if (args.max_gerp_rs != null) query.append("max_gerp_rs", String(args.max_gerp_rs))
if (args.min_bayesdel_addaf_score != null) query.append("min_bayesdel_addaf_score", String(args.min_bayesdel_addaf_score))
if (args.max_bayesdel_addaf_score != null) query.append("max_bayesdel_addaf_score", String(args.max_bayesdel_addaf_score))
if (args.min_bayesdel_noaf_score != null) query.append("min_bayesdel_noaf_score", String(args.min_bayesdel_noaf_score))
if (args.max_bayesdel_noaf_score != null) query.append("max_bayesdel_noaf_score", String(args.max_bayesdel_noaf_score))
if (args.min_mpc_score != null) query.append("min_mpc_score", String(args.min_mpc_score))
if (args.max_mpc_score != null) query.append("max_mpc_score", String(args.max_mpc_score))
if (args.min_spliceai_max_score != null) query.append("min_spliceai_max_score", String(args.min_spliceai_max_score))
if (args.max_spliceai_max_score != null) query.append("max_spliceai_max_score", String(args.max_spliceai_max_score))
if (args.min_pli != null) query.append("min_pli", String(args.min_pli))
if (args.max_pli != null) query.append("max_pli", String(args.max_pli))
if (args.min_oe_lof_upper != null) query.append("min_oe_lof_upper", String(args.min_oe_lof_upper))
if (args.max_oe_lof_upper != null) query.append("max_oe_lof_upper", String(args.max_oe_lof_upper))
if (args.min_oe_lof != null) query.append("min_oe_lof", String(args.min_oe_lof))
if (args.max_oe_lof != null) query.append("max_oe_lof", String(args.max_oe_lof))
if (args.min_mis_z != null) query.append("min_mis_z", String(args.min_mis_z))
if (args.max_mis_z != null) query.append("max_mis_z", String(args.max_mis_z))

const url = `${baseUrl.replace(/\/+$/, '')}/sessions/${encodeURIComponent(String(args.session_id))}/variants/browse${query.size > 0 ? `?${query}` : ''}`

const res = await fetchFn(url, {method: "GET", headers})

if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}})

return validateResponse(getApiSessionsSessionIdVariantsBrowseResponse, await res.json())
};