import {z} from 'zod' export type GetApiReferenceCytobandChromArgs = {chrom: string}; export type GetApiReferenceCytobandChromOptions = {baseUrl: string, fetch?: typeof fetch | undefined}; export const cytobandBand = z.object({start_pos: z.number().int(), end_pos: z.number().int(), band_name: z.string().nullable().optional(), gie_stain: z.string().nullable().optional(), arm: z.string().nullable().optional()}); export const cytobandResponse = z.object({chrom: z.string(), coord_system: z.string().optional(), bands: z.array(cytobandBand)}); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Get cytoband ideogram bands for a chromosome * * GET /reference/cytoband/{chrom} */ export const getApiReferenceCytobandChrom = async (args: GetApiReferenceCytobandChromArgs, options: GetApiReferenceCytobandChromOptions) => { const {baseUrl, fetch: fetchFn = fetch} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('accept', "application/json") const url = `${baseUrl.replace(/\/+$/, '')}/reference/cytoband/${encodeURIComponent(String(args.chrom))}${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "GET", headers}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(cytobandResponse, await res.json()) };