import {z} from 'zod' export type ApiKeywordMatch = {id?: string | undefined, name?: string | undefined, keyword?: string | undefined, category?: (Array<'GENERAL' | 'SOLID_TUMOR' | 'HEMATO' | 'NON_NEOPLASTIC' | 'SEERRX' | 'SEER_TRAINING' | 'LYMPH_NODES' | 'STAGING'>) | undefined, start?: number | undefined, end?: number | undefined}; export type SiteRange = {low?: string | undefined, high?: string | undefined}; export type YearRange = {start?: number | undefined, end?: number | undefined}; export type YearRangeString = {value?: string | undefined, start?: number | undefined, end?: number | undefined}; export type DateRangeString = {value?: string | undefined, start?: string | undefined, end?: string | undefined}; export type DiseaseSource = {name?: string | undefined, section?: string | undefined, pages?: string | undefined}; export type YearRangeInteger = {value?: number | undefined, start?: number | undefined, end?: number | undefined}; export type Disease = {id?: string | undefined, name?: string | undefined, version?: string | undefined, hidden?: boolean | undefined, status?: string | undefined, assigned_to?: string | undefined, first_published?: string | undefined, last_modified?: string | undefined, fingerprint?: string | undefined, note?: string | undefined, field_notes?: {[key: string]: string} | undefined, score?: number | undefined, glossary?: Array | undefined, icdO3_morphology?: string | undefined, primary_site?: Array | undefined, primary_site_text?: string | undefined, type?: ('SOLID_TUMOR' | 'HEMATO' | 'NON_NEOPLASTIC') | undefined, valid?: YearRange | undefined, obsolete_new_code?: Array | undefined, reportable?: Array | undefined, abstractor_note?: Array | undefined, treatment?: Array | undefined, genetics?: Array | undefined, alternate_name?: Array | undefined, definition?: Array | undefined, icdO2_morphology?: Array | undefined, icdO1_morphology?: Array | undefined, icd_10cm_code?: Array | undefined, icd_10_code?: Array | undefined, icd_9_code?: Array | undefined, signs?: Array | undefined, exams?: Array | undefined, mortality?: Array | undefined, source?: Array | undefined, icdO3_effective?: YearRange | undefined, icdO2_effective?: YearRange | undefined, icdO1_effective?: YearRange | undefined, missing_primary_site_message?: Array | undefined, grade?: Array | undefined, transform_to?: Array | undefined, transform_to_text?: Array | undefined, transform_from?: Array | undefined, transform_from_text?: Array | undefined, immunophenotype?: Array | undefined, diagnosis_method?: Array | undefined, module_id?: Array | undefined, same_primary?: Array | undefined, same_primary_text?: Array | undefined, progression?: Array | undefined, diagnostic_confirmation?: Array | undefined, site_category?: string | undefined, biomarkers?: Array | undefined, treatment_text?: Array | undefined, recurrence?: Array | undefined, metastatic?: Array | undefined}; export type UpdateApiRestDiseaseVersionUpdateArgs = {version: string, body: Disease}; export type UpdateApiRestDiseaseVersionUpdateOptions = {baseUrl?: string | undefined, apiKeyScheme?: string | undefined, fetch?: typeof fetch | undefined}; export const apiKeywordMatch = z.object({id: z.string().optional(), name: z.string().optional(), keyword: z.string().optional(), category: z.array(z.enum(["GENERAL", "SOLID_TUMOR", "HEMATO", "NON_NEOPLASTIC", "SEERRX", "SEER_TRAINING", "LYMPH_NODES", "STAGING"])).optional(), start: z.number().int().optional(), end: z.number().int().optional()}); export const siteRange = z.object({low: z.string().optional(), high: z.string().optional()}); export const yearRange = z.object({start: z.number().int().optional(), end: z.number().int().optional()}); export const yearRangeString = z.object({value: z.string().optional(), start: z.number().int().optional(), end: z.number().int().optional()}); export const dateRangeString = z.object({value: z.string().optional(), start: z.string().optional(), end: z.string().optional()}); export const diseaseSource = z.object({name: z.string().optional(), section: z.string().optional(), pages: z.string().optional()}); export const yearRangeInteger = z.object({value: z.number().int().optional(), start: z.number().int().optional(), end: z.number().int().optional()}); export const disease = z.object({id: z.string().optional(), name: z.string().optional(), version: z.string().optional(), hidden: z.boolean().optional(), status: z.string().optional(), assigned_to: z.string().optional(), first_published: z.string().optional(), last_modified: z.string().optional(), fingerprint: z.string().optional(), note: z.string().optional(), field_notes: z.record(z.string(), z.string()).optional(), score: z.number().optional(), glossary: z.array(apiKeywordMatch).optional(), icdO3_morphology: z.string().optional(), primary_site: z.array(siteRange).optional(), primary_site_text: z.string().optional(), type: z.enum(["SOLID_TUMOR", "HEMATO", "NON_NEOPLASTIC"]).optional(), valid: yearRange.optional(), obsolete_new_code: z.array(z.string()).optional(), reportable: z.array(yearRange).optional(), abstractor_note: z.array(yearRangeString).optional(), treatment: z.array(yearRangeString).optional(), genetics: z.array(yearRangeString).optional(), alternate_name: z.array(yearRangeString).optional(), definition: z.array(yearRangeString).optional(), icdO2_morphology: z.array(z.string()).optional(), icdO1_morphology: z.array(z.string()).optional(), icd_10cm_code: z.array(dateRangeString).optional(), icd_10_code: z.array(z.string()).optional(), icd_9_code: z.array(z.string()).optional(), signs: z.array(yearRangeString).optional(), exams: z.array(yearRangeString).optional(), mortality: z.array(yearRangeString).optional(), source: z.array(diseaseSource).optional(), icdO3_effective: yearRange.optional(), icdO2_effective: yearRange.optional(), icdO1_effective: yearRange.optional(), missing_primary_site_message: z.array(yearRangeString).optional(), grade: z.array(yearRangeInteger).optional(), transform_to: z.array(yearRangeString).optional(), transform_to_text: z.array(yearRangeString).optional(), transform_from: z.array(yearRangeString).optional(), transform_from_text: z.array(yearRangeString).optional(), immunophenotype: z.array(yearRangeString).optional(), diagnosis_method: z.array(yearRangeString).optional(), module_id: z.array(yearRangeString).optional(), same_primary: z.array(yearRangeString).optional(), same_primary_text: z.array(yearRangeString).optional(), progression: z.array(yearRangeString).optional(), diagnostic_confirmation: z.array(yearRangeString).optional(), site_category: z.string().optional(), biomarkers: z.array(yearRangeString).optional(), treatment_text: z.array(yearRangeString).optional(), recurrence: z.array(yearRangeString).optional(), metastatic: z.array(yearRangeString).optional()}); export const validateResponse = async ( schema: { readonly '~standard': { readonly validate: (value: unknown) => ({ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }) | Promise<{ readonly value: Output; readonly issues?: undefined } | { readonly issues: ReadonlyArray<{ readonly message: string; readonly path?: ReadonlyArray | undefined }> }> } }, value: unknown ): Promise => { const result = await schema['~standard'].validate(value) if (result.issues !== undefined) { const detail = result.issues .map(({ message, path }) => path?.length ? `${path.map((segment) => String(typeof segment === 'object' ? segment.key : segment)).join('.')}: ${message}` : message ) .join('; ') throw new Error(`Response does not match the schema: ${detail}`, { cause: { issues: result.issues } }) } return result.value }; /** * Update a disease entry * * PUT /rest/disease/{version}/update */ export const updateApiRestDiseaseVersionUpdate = async (args: UpdateApiRestDiseaseVersionUpdateArgs, options?: UpdateApiRestDiseaseVersionUpdateOptions) => { const {baseUrl = "https://api.seer.cancer.gov", fetch: fetchFn = fetch, apiKeyScheme} = options ?? {} const query = new URLSearchParams() const headers = new Headers() headers.set('content-type', "application/json") headers.set('accept', "application/json") if (apiKeyScheme !== undefined) headers.set("X-SEERAPI-Key", apiKeyScheme) const url = `${baseUrl.replace(/\/+$/, '')}/rest/disease/${encodeURIComponent(String(args.version))}/update${query.size > 0 ? `?${query}` : ''}` const res = await fetchFn(url, {method: "PUT", headers, body: JSON.stringify(args.body)}) if (!res.ok) throw new Error(`Request failed with status ${res.status}`, {cause: {status: res.status, body: await res.text()}}) return validateResponse(disease, await res.json()) };